Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC011477.6-201ENST00000604980 1927 ntBASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC015818.8-201ENST00000587907 1519 ntBASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 RNF126P1-201ENST00000567452 1320 ntBASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 KRT18P60-201ENST00000312876 1297 ntBASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC004945.1-201ENST00000416738 983 ntBASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
LINC01558Q9Y6Z2 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AC036111.1-201ENST00000533973 1582 ntBASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 C18orf15-201ENST00000623680 2534 ntBASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LINC01558Q9Y6Z2 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms