Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC004449.1-201ENST00000564240 433 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 AC004835.2-201ENST00000603762 682 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 AC016027.1-202ENST00000607927 1699 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 DOC2GP-204ENST00000639052 2548 ntBASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 AL031731.1-201ENST00000642131 2094 ntBASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHMP4CQ96CF2 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 UXT-AS1-201ENST00000590504 1525 ntBASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 AP000344.2-201ENST00000512987 629 ntBASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 AL138918.1-201ENST00000568306 659 ntBASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4CQ96CF2 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 GPAA1P2-202ENST00000606848 1787 ntBASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.52■□□□□ 0.71
CHMP4CQ96CF2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 PKD1P5-201ENST00000532415 10291 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms