Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 AC105339.3-201ENST00000560043 636 ntBASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CCDC54Q8NEL0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms