Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CIITAP33076 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.36■□□□□ 0.53
CIITAP33076 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.36■□□□□ 0.53
CIITAP33076 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.36■□□□□ 0.53
CIITAP33076 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 AC026979.3-201ENST00000607315 403 ntBASIC18.36■□□□□ 0.53
CIITAP33076 AC138649.4-201ENST00000612222 287 ntBASIC18.36■□□□□ 0.53
CIITAP33076 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.36■□□□□ 0.53
CIITAP33076 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CIITAP33076 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.35■□□□□ 0.53
CIITAP33076 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CIITAP33076 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.35■□□□□ 0.53
CIITAP33076 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 SPDYE17-201ENST00000412399 783 ntBASIC18.35■□□□□ 0.53
CIITAP33076 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 AL139010.1-201ENST00000454878 894 ntBASIC18.35■□□□□ 0.53
CIITAP33076 AC097493.3-201ENST00000509725 367 ntBASIC18.35■□□□□ 0.53
CIITAP33076 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.35■□□□□ 0.53
CIITAP33076 AC005498.2-205ENST00000593218 784 ntBASIC18.35■□□□□ 0.53
CIITAP33076 AL355385.1-201ENST00000606123 409 ntBASIC18.35■□□□□ 0.53
CIITAP33076 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
CIITAP33076 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.35■□□□□ 0.53
CIITAP33076 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.35■□□□□ 0.53
CIITAP33076 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.35■□□□□ 0.53
CIITAP33076 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CIITAP33076 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.35■□□□□ 0.53
CIITAP33076 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.35■□□□□ 0.53
CIITAP33076 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CIITAP33076 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.34■□□□□ 0.53
CIITAP33076 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CIITAP33076 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CIITAP33076 AL118508.1-201ENST00000613502 2345 ntBASIC18.34■□□□□ 0.53
CIITAP33076 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CIITAP33076 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 FO538757.1-201ENST00000623083 1397 ntBASIC18.34■□□□□ 0.53
CIITAP33076 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 AC084018.2-201ENST00000613093 2607 ntBASIC18.34■□□□□ 0.53
CIITAP33076 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 MIR943-201ENST00000401286 94 ntBASIC18.34■□□□□ 0.53
CIITAP33076 TREML5P-201ENST00000421694 576 ntBASIC18.34■□□□□ 0.53
CIITAP33076 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.34■□□□□ 0.53
CIITAP33076 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.34■□□□□ 0.53
CIITAP33076 SPDYE12P-201ENST00000618416 771 ntBASIC18.34■□□□□ 0.53
CIITAP33076 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.34■□□□□ 0.53
CIITAP33076 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CIITAP33076 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CIITAP33076 AC006449.5-201ENST00000610658 2098 ntBASIC18.34■□□□□ 0.53
CIITAP33076 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CIITAP33076 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CIITAP33076 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CIITAP33076 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CIITAP33076 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
CIITAP33076 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CIITAP33076 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CIITAP33076 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
CIITAP33076 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CIITAP33076 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.33■□□□□ 0.52
CIITAP33076 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CIITAP33076 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.33■□□□□ 0.52
CIITAP33076 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.33■□□□□ 0.52
CIITAP33076 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.33■□□□□ 0.52
CIITAP33076 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CIITAP33076 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.33■□□□□ 0.52
CIITAP33076 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 AC073592.8-201ENST00000624126 511 ntBASIC18.33■□□□□ 0.52
CIITAP33076 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.33■□□□□ 0.52
CIITAP33076 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.33■□□□□ 0.52
CIITAP33076 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CIITAP33076 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.33■□□□□ 0.52
CIITAP33076 AC092364.2-201ENST00000596710 2692 ntBASIC18.33■□□□□ 0.52
CIITAP33076 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CIITAP33076 AL691432.1-201ENST00000596308 1422 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms