Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.75□□□□□ -0.37
CXCL1P09341 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CXCL1P09341 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC12.75□□□□□ -0.37
CXCL1P09341 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 HLA-F-220ENST00000434407 884 ntBASIC12.75□□□□□ -0.37
CXCL1P09341 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 RASA4DP-201ENST00000460726 1199 ntBASIC12.75□□□□□ -0.37
CXCL1P09341 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC12.75□□□□□ -0.37
CXCL1P09341 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC12.75□□□□□ -0.37
CXCL1P09341 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC12.75□□□□□ -0.37
CXCL1P09341 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 AC010947.1-201ENST00000623454 693 ntBASIC12.75□□□□□ -0.37
CXCL1P09341 AC097637.2-201ENST00000624096 1997 ntBASIC12.75□□□□□ -0.37
CXCL1P09341 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 COL6A4P2-202ENST00000504443 2753 ntBASIC12.75□□□□□ -0.37
CXCL1P09341 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
CXCL1P09341 IGHGP-201ENST00000390555 1178 ntBASIC12.74□□□□□ -0.37
CXCL1P09341 CRAT-202ENST00000393384 973 ntTSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 PON3-205ENST00000451904 1053 ntTSL 3 BASIC12.74□□□□□ -0.37
CXCL1P09341 AC068472.1-201ENST00000474589 881 ntBASIC12.74□□□□□ -0.37
CXCL1P09341 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC12.74□□□□□ -0.37
CXCL1P09341 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC12.74□□□□□ -0.37
CXCL1P09341 USP36-216ENST00000589424 970 ntTSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC12.74□□□□□ -0.37
CXCL1P09341 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CXCL1P09341 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CXCL1P09341 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CXCL1P09341 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms