Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TOP3BO95985 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.83■□□□□ 0.28
TOP3BO95985 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TOP3BO95985 AC024909.3-201ENST00000611513 2257 ntBASIC16.83■□□□□ 0.28
TOP3BO95985 AC138649.4-201ENST00000612222 287 ntBASIC16.83■□□□□ 0.28
TOP3BO95985 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
TOP3BO95985 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TOP3BO95985 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TOP3BO95985 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TOP3BO95985 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.83■□□□□ 0.28
TOP3BO95985 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TOP3BO95985 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 AC092919.2-201ENST00000623631 1645 ntBASIC16.82■□□□□ 0.28
TOP3BO95985 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 NCF1C-201ENST00000438382 1427 ntBASIC16.82■□□□□ 0.28
TOP3BO95985 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 LINC00982-205ENST00000420957 435 ntBASIC16.82■□□□□ 0.28
TOP3BO95985 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.82■□□□□ 0.28
TOP3BO95985 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.82■□□□□ 0.28
TOP3BO95985 AC023141.13-201ENST00000604991 943 ntBASIC16.82■□□□□ 0.28
TOP3BO95985 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 REXO1L3P-201ENST00000622202 1288 ntBASIC16.82■□□□□ 0.28
TOP3BO95985 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.82■□□□□ 0.28
TOP3BO95985 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TOP3BO95985 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.82■□□□□ 0.28
TOP3BO95985 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 ME2P1-201ENST00000426028 1970 ntBASIC16.81■□□□□ 0.28
TOP3BO95985 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 AP002414.1-201ENST00000391405 1147 ntBASIC16.81■□□□□ 0.28
TOP3BO95985 BASP1P1-201ENST00000430708 665 ntBASIC16.81■□□□□ 0.28
TOP3BO95985 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.81■□□□□ 0.28
TOP3BO95985 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.81■□□□□ 0.28
TOP3BO95985 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 OR6D1P-203ENST00000641209 4860 ntBASIC16.81■□□□□ 0.28
TOP3BO95985 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.81■□□□□ 0.28
TOP3BO95985 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TOP3BO95985 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TOP3BO95985 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TOP3BO95985 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TOP3BO95985 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TOP3BO95985 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TOP3BO95985 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.8■□□□□ 0.28
TOP3BO95985 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TOP3BO95985 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms