Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBFD1O14562 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBFD1O14562 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
UBFD1O14562 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBFD1O14562 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
UBFD1O14562 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
UBFD1O14562 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.9■□□□□ 0.14
UBFD1O14562 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.9■□□□□ 0.14
UBFD1O14562 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
UBFD1O14562 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 AC022532.1-201ENST00000624563 1728 ntBASIC15.89■□□□□ 0.13
UBFD1O14562 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
UBFD1O14562 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 PPT1-215ENST00000641471 2368 ntBASIC15.89■□□□□ 0.13
UBFD1O14562 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 AC093724.1-201ENST00000448659 1027 ntBASIC15.89■□□□□ 0.13
UBFD1O14562 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.89■□□□□ 0.13
UBFD1O14562 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
UBFD1O14562 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.89■□□□□ 0.13
UBFD1O14562 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
UBFD1O14562 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
UBFD1O14562 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBFD1O14562 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.89■□□□□ 0.13
UBFD1O14562 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.88■□□□□ 0.13
UBFD1O14562 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
UBFD1O14562 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 VN2R19P-201ENST00000442399 1052 ntBASIC15.88■□□□□ 0.13
UBFD1O14562 AC009947.1-201ENST00000444350 727 ntBASIC15.88■□□□□ 0.13
UBFD1O14562 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.88■□□□□ 0.13
UBFD1O14562 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 AL031008.1-201ENST00000619963 541 ntBASIC15.88■□□□□ 0.13
UBFD1O14562 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
UBFD1O14562 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
UBFD1O14562 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
UBFD1O14562 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
UBFD1O14562 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.88■□□□□ 0.13
UBFD1O14562 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.88■□□□□ 0.13
UBFD1O14562 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms