Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.83□□□□□ -0.04
HIF3AQ9Y2N7 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 RHOQP3-201ENST00000437982 621 ntBASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 RNA5SP415-201ENST00000517246 115 ntBASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AC109635.5-201ENST00000533593 962 ntBASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SLC25A6P4-201ENST00000586535 553 ntBASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AC046158.3-201ENST00000624947 2558 ntBASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HIF3AQ9Y2N7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 U82695.1-201ENST00000635752 1889 ntBASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 MIR648-201ENST00000385046 94 ntBASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms