Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AP001889.1-201ENST00000525414 633 ntBASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 PTP4A1P2-201ENST00000546033 454 ntBASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNRF3Q9ULT6 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 LINC01144-201ENST00000626198 1710 ntBASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AC004987.2-201ENST00000395959 1148 ntBASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AZGP1P1-201ENST00000411909 902 ntBASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AC068587.3-201ENST00000526613 355 ntBASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNRF3Q9ULT6 AL691432.1-201ENST00000596308 1422 ntBASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 EEF1DP4-201ENST00000446006 880 ntBASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNRF3Q9ULT6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms