Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.29■□□□□ 0.68
BRF1Q92994 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
BRF1Q92994 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
BRF1Q92994 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.28■□□□□ 0.68
BRF1Q92994 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
BRF1Q92994 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.28■□□□□ 0.68
BRF1Q92994 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.28■□□□□ 0.68
BRF1Q92994 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.28■□□□□ 0.68
BRF1Q92994 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.28■□□□□ 0.68
BRF1Q92994 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.28■□□□□ 0.68
BRF1Q92994 AC002347.1-201ENST00000569543 541 ntBASIC19.28■□□□□ 0.68
BRF1Q92994 AC092902.6-201ENST00000641783 218 ntBASIC19.28■□□□□ 0.68
BRF1Q92994 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
BRF1Q92994 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
BRF1Q92994 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.28■□□□□ 0.68
BRF1Q92994 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF1Q92994 AL365203.3-201ENST00000609742 2057 ntBASIC19.28■□□□□ 0.68
BRF1Q92994 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.27■□□□□ 0.68
BRF1Q92994 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
BRF1Q92994 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF1Q92994 MCCD1P2-201ENST00000423228 335 ntBASIC19.27■□□□□ 0.68
BRF1Q92994 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
BRF1Q92994 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.27■□□□□ 0.68
BRF1Q92994 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.27■□□□□ 0.68
BRF1Q92994 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.27■□□□□ 0.68
BRF1Q92994 RARRES2P8-201ENST00000566335 367 ntBASIC19.27■□□□□ 0.68
BRF1Q92994 AL138918.1-201ENST00000568306 659 ntBASIC19.27■□□□□ 0.68
BRF1Q92994 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
BRF1Q92994 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.27■□□□□ 0.68
BRF1Q92994 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.27■□□□□ 0.68
BRF1Q92994 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRF1Q92994 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRF1Q92994 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
BRF1Q92994 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRF1Q92994 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
BRF1Q92994 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.27■□□□□ 0.67
BRF1Q92994 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRF1Q92994 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.26■□□□□ 0.67
BRF1Q92994 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.26■□□□□ 0.67
BRF1Q92994 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 AL355306.1-201ENST00000415580 579 ntBASIC19.26■□□□□ 0.67
BRF1Q92994 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
BRF1Q92994 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.26■□□□□ 0.67
BRF1Q92994 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
BRF1Q92994 PAUPAR-201ENST00000630360 2965 ntBASIC19.26■□□□□ 0.67
BRF1Q92994 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.26■□□□□ 0.67
BRF1Q92994 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.26■□□□□ 0.67
BRF1Q92994 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
BRF1Q92994 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRF1Q92994 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms