Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 RPL37AP1-201ENST00000412502 279 ntBASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 SPTLC1P1-201ENST00000447199 261 ntBASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TEX28P1-201ENST00000613479 1221 ntBASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TEX28P2-201ENST00000617764 1221 ntBASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDDC3Q8N4P3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.39■□□□□ 0.22
HDDC3Q8N4P3 PCGF3-213ENST00000620529 1899 ntBASIC16.39■□□□□ 0.22
HDDC3Q8N4P3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AL133215.2-201ENST00000609242 977 ntBASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDDC3Q8N4P3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms