Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 PMS2P4-201ENST00000412466 1052 ntBASIC17.22■□□□□ 0.35
RNF43Q68DV7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 AL031055.1-201ENST00000606362 631 ntBASIC17.22■□□□□ 0.35
RNF43Q68DV7 AJ011932.1-201ENST00000621707 465 ntBASIC17.22■□□□□ 0.35
RNF43Q68DV7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF43Q68DV7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF43Q68DV7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 LINC00895-201ENST00000629028 1637 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 AL365203.3-201ENST00000609742 2057 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 AC109322.1-201ENST00000524499 1264 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 RARRES2P8-201ENST00000566335 367 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 AL161645.1-201ENST00000622716 1255 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 LINC00628-201ENST00000628516 1289 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF43Q68DV7 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF43Q68DV7 AC092850.2-201ENST00000623821 2697 ntBASIC17.21■□□□□ 0.35
RNF43Q68DV7 AC005052.1-201ENST00000625181 2492 ntBASIC17.21■□□□□ 0.34
RNF43Q68DV7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RNF43Q68DV7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RNF43Q68DV7 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AL671277.1-201ENST00000429656 993 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC023141.5-201ENST00000458585 616 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 KRT8P48-201ENST00000515599 1220 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC243562.1-201ENST00000560672 389 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC026120.1-201ENST00000611536 926 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 AP001350.2-201ENST00000625104 1094 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms