Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 DUX4L17-201ENST00000557360 1267 ntBASIC12.63□□□□□ -0.39
HIST1H1AQ02539 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 RNF151-202ENST00000569210 853 ntTSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SDCCAG3P1-201ENST00000589292 1150 ntBASIC12.63□□□□□ -0.39
HIST1H1AQ02539 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 AL355877.3-201ENST00000622820 899 ntBASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.63□□□□□ -0.39
HIST1H1AQ02539 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.63□□□□□ -0.39
HIST1H1AQ02539 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 SART3-203ENST00000546611 1184 ntBASIC12.62□□□□□ -0.39
HIST1H1AQ02539 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 MTDHP4-201ENST00000600287 670 ntBASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HIST1H1AQ02539 LINC00895-201ENST00000629028 1637 ntBASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms