Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PKNOX1P55347 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.14■□□□□ 0.18
PKNOX1P55347 AC063926.3-201ENST00000624734 5658 ntBASIC16.14■□□□□ 0.18
PKNOX1P55347 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
PKNOX1P55347 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.14■□□□□ 0.17
PKNOX1P55347 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.14■□□□□ 0.17
PKNOX1P55347 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.14■□□□□ 0.17
PKNOX1P55347 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.14■□□□□ 0.17
PKNOX1P55347 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.14■□□□□ 0.17
PKNOX1P55347 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.14■□□□□ 0.17
PKNOX1P55347 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PKNOX1P55347 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 AC020765.3-201ENST00000613051 740 ntBASIC16.14■□□□□ 0.17
PKNOX1P55347 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PKNOX1P55347 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.14■□□□□ 0.17
PKNOX1P55347 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.13■□□□□ 0.17
PKNOX1P55347 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 AC073347.1-201ENST00000421633 2643 ntBASIC16.13■□□□□ 0.17
PKNOX1P55347 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PKNOX1P55347 RPS2P1-201ENST00000434010 821 ntBASIC16.13■□□□□ 0.17
PKNOX1P55347 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.13■□□□□ 0.17
PKNOX1P55347 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.13■□□□□ 0.17
PKNOX1P55347 AC010654.1-201ENST00000615722 808 ntBASIC16.13■□□□□ 0.17
PKNOX1P55347 MIR1199-201ENST00000621445 119 ntBASIC16.13■□□□□ 0.17
PKNOX1P55347 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PKNOX1P55347 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.13■□□□□ 0.17
PKNOX1P55347 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.13■□□□□ 0.17
PKNOX1P55347 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PKNOX1P55347 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms