Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.48□□□□□ -0.25
CDX1P47902 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.48□□□□□ -0.25
CDX1P47902 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 AC092171.3-201ENST00000610122 2651 ntBASIC13.47□□□□□ -0.25
CDX1P47902 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 AC097637.2-201ENST00000624096 1997 ntBASIC13.47□□□□□ -0.25
CDX1P47902 AL137784.3-201ENST00000623858 2288 ntBASIC13.47□□□□□ -0.25
CDX1P47902 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 MIR574-201ENST00000385209 96 ntBASIC13.47□□□□□ -0.25
CDX1P47902 AC073621.1-201ENST00000392730 636 ntBASIC13.47□□□□□ -0.25
CDX1P47902 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.47□□□□□ -0.25
CDX1P47902 KRT18P58-201ENST00000527480 1120 ntBASIC13.47□□□□□ -0.25
CDX1P47902 SLC25A1P1-201ENST00000528351 927 ntBASIC13.47□□□□□ -0.25
CDX1P47902 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.47□□□□□ -0.25
CDX1P47902 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
CDX1P47902 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 Z83851.2-201ENST00000609564 659 ntBASIC13.47□□□□□ -0.25
CDX1P47902 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.47□□□□□ -0.25
CDX1P47902 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 AP002414.3-201ENST00000589352 1468 ntBASIC13.47□□□□□ -0.25
CDX1P47902 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.47□□□□□ -0.25
CDX1P47902 AC022532.1-201ENST00000624563 1728 ntBASIC13.47□□□□□ -0.25
CDX1P47902 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms