Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXD4P09016 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HOXD4P09016 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXD4P09016 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.92□□□□□ -0.02
HOXD4P09016 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HOXD4P09016 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXD4P09016 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HOXD4P09016 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HOXD4P09016 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.92□□□□□ -0.02
HOXD4P09016 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXD4P09016 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
HOXD4P09016 PKD1P1-201ENST00000458669 6805 ntBASIC14.92□□□□□ -0.02
HOXD4P09016 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.92□□□□□ -0.02
HOXD4P09016 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.91□□□□□ -0.02
HOXD4P09016 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 KLF2P3-201ENST00000451977 1087 ntBASIC14.91□□□□□ -0.02
HOXD4P09016 INGX-202ENST00000489074 768 ntBASIC14.91□□□□□ -0.02
HOXD4P09016 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.91□□□□□ -0.02
HOXD4P09016 DUX4L27-201ENST00000554796 1261 ntBASIC14.91□□□□□ -0.02
HOXD4P09016 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.91□□□□□ -0.02
HOXD4P09016 AL390955.2-201ENST00000603032 514 ntBASIC14.91□□□□□ -0.02
HOXD4P09016 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HOXD4P09016 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXD4P09016 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.91□□□□□ -0.02
HOXD4P09016 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HOXD4P09016 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXD4P09016 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
HOXD4P09016 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HOXD4P09016 AC022188.1-201ENST00000620960 1664 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HOXD4P09016 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 AC024909.3-201ENST00000611513 2257 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.9□□□□□ -0.02
HOXD4P09016 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXD4P09016 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXD4P09016 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 BASP1P1-201ENST00000430708 665 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 GPS2P2-201ENST00000430745 888 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXD4P09016 AC140878.1-201ENST00000565277 250 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
HOXD4P09016 AP000842.3-202ENST00000569238 1080 ntBASIC14.9□□□□□ -0.02
HOXD4P09016 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms