Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 AL022342.1-201ENST00000400363 863 ntBASIC13.31□□□□□ -0.28
FOXA2Q9Y261 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA2Q9Y261 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 REXO1L8P-201ENST00000604378 1897 ntBASIC13.3□□□□□ -0.28
FOXA2Q9Y261 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.3□□□□□ -0.28
FOXA2Q9Y261 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 SLC25A1P1-201ENST00000528351 927 ntBASIC13.3□□□□□ -0.28
FOXA2Q9Y261 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 AC034105.1-201ENST00000563488 319 ntBASIC13.3□□□□□ -0.28
FOXA2Q9Y261 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms