Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 AC004449.1-201ENST00000564240 433 ntBASIC15.97■□□□□ 0.15
VPS4AQ9UN37 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4AQ9UN37 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 ALOX12P2-203ENST00000570921 1945 ntBASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 TSEN15P1-201ENST00000423257 515 ntBASIC15.96■□□□□ 0.15
VPS4AQ9UN37 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AC018845.2-201ENST00000568326 409 ntBASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AL589182.2-201ENST00000619332 1049 ntBASIC15.96■□□□□ 0.15
VPS4AQ9UN37 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4AQ9UN37 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4AQ9UN37 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4AQ9UN37 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.96■□□□□ 0.14
VPS4AQ9UN37 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4AQ9UN37 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 VN2R19P-201ENST00000442399 1052 ntBASIC15.95■□□□□ 0.14
VPS4AQ9UN37 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AC013467.2-201ENST00000605472 835 ntBASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AL096865.1-201ENST00000606796 927 ntBASIC15.95■□□□□ 0.14
VPS4AQ9UN37 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 AL513523.2-202ENST00000427283 2040 ntBASIC15.95■□□□□ 0.14
VPS4AQ9UN37 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4AQ9UN37 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms