Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 AC144831.1-201ENST00000573312 2656 ntBASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 PPT1-215ENST00000641471 2368 ntBASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 RPS2P28-201ENST00000314255 741 ntBASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 AF186996.4-201ENST00000467186 377 ntBASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMA1Q9UHB6 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AL513480.1-201ENST00000451731 511 ntBASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMA1Q9UHB6 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.89■□□□□ 0.46
LIMA1Q9UHB6 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIMA1Q9UHB6 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 HAUS4P1-201ENST00000406739 1145 ntBASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 IGLL3P-201ENST00000412472 434 ntBASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LIMA1Q9UHB6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms