Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 KRT18P34-201ENST00000488218 1270 ntBASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CUEDC1Q9NWM3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.89■□□□□ 0.14
CUEDC1Q9NWM3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
CUEDC1Q9NWM3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 TFAMP1-201ENST00000412727 736 ntBASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 KRT8P48-201ENST00000515599 1220 ntBASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
CUEDC1Q9NWM3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CUEDC1Q9NWM3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms