Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 PCGF3-213ENST00000620529 1899 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 KRT18P32-201ENST00000424695 1287 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 AC023141.5-201ENST00000458585 616 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 PRYP6-201ENST00000514804 343 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 AC027612.4-201ENST00000605371 583 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 AL662844.4-201ENST00000606367 2838 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC093520.2-201ENST00000561830 333 ntBASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC073439.1-201ENST00000624121 1774 ntBASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 GGT3P-204ENST00000453783 1664 ntBASIC15.48■□□□□ 0.07
PTCHD1Q96NR3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 KRT18P28-201ENST00000453838 1332 ntBASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms