Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC44A1Q8WWI5 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 AKR1C7P-201ENST00000305623 895 ntBASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 MIR3652-201ENST00000579335 131 ntBASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 U82695.1-201ENST00000635752 1889 ntBASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC44A1Q8WWI5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AC136632.2-201ENST00000512891 861 ntBASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 IGHV3-65-201ENST00000523210 341 ntBASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC44A1Q8WWI5 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.22
SLC44A1Q8WWI5 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
SLC44A1Q8WWI5 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 SAPCD2P3-201ENST00000455031 850 ntBASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.45■□□□□ 0.22
SLC44A1Q8WWI5 AC091304.2-201ENST00000564639 760 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms