Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 RHOXF1P1-202ENST00000635473 501 ntBASIC21.95■■□□□ 1.1
NPHP3Q7Z494 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 CLUHP6-201ENST00000580789 941 ntBASIC21.94■■□□□ 1.1
NPHP3Q7Z494 AC106872.11-201ENST00000605838 421 ntBASIC21.94■■□□□ 1.1
NPHP3Q7Z494 AC091271.1-201ENST00000611877 1162 ntBASIC21.94■■□□□ 1.1
NPHP3Q7Z494 AC008687.7-202ENST00000637404 953 ntBASIC21.94■■□□□ 1.1
NPHP3Q7Z494 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 CROCCP2-202ENST00000412962 2773 ntBASIC21.94■■□□□ 1.1
NPHP3Q7Z494 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
NPHP3Q7Z494 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 TPO-206ENST00000382269 1155 ntTSL 5 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 AC074338.1-201ENST00000416825 156 ntBASIC21.93■■□□□ 1.1
NPHP3Q7Z494 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 FAM86HP-204ENST00000513466 959 ntBASIC21.93■■□□□ 1.1
NPHP3Q7Z494 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 AC120045.2-201ENST00000567334 178 ntBASIC21.93■■□□□ 1.1
NPHP3Q7Z494 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 HADH-212ENST00000638621 741 ntTSL 5 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.93■■□□□ 1.1
NPHP3Q7Z494 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AZGP1P1-201ENST00000411909 902 ntBASIC21.92■■□□□ 1.1
NPHP3Q7Z494 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AC106760.1-201ENST00000508690 800 ntBASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 COG4-212ENST00000564653 590 ntTSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AC244669.2-201ENST00000612320 853 ntBASIC21.92■■□□□ 1.1
NPHP3Q7Z494 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms