Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 FAAHP1-202ENST00000446499 1238 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AC079781.3-201ENST00000449110 356 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AL031008.1-201ENST00000619963 541 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 REXO1L6P-202ENST00000619970 1078 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AC026396.1-201ENST00000419388 421 ntBASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AP001269.4-201ENST00000609611 512 ntBASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 TNRC18P2-201ENST00000417666 2714 ntBASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PPP4R4Q6NUP7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 AP005117.1-202ENST00000581724 1908 ntBASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.8■□□□□ 0.12
PPP4R4Q6NUP7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms