Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 AC099398.1-201ENST00000567919 2776 ntBASIC14.85□□□□□ -0.03
SUMO3P55854 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SUMO3P55854 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 UXT-AS1-201ENST00000590504 1525 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 MIR1233-2-201ENST00000408138 82 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 MIR1233-1-201ENST00000408722 82 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 AC004967.1-201ENST00000453589 447 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.84□□□□□ -0.03
SUMO3P55854 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.84□□□□□ -0.03
SUMO3P55854 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
SUMO3P55854 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SUMO3P55854 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SUMO3P55854 AL596087.1-201ENST00000400979 1969 ntBASIC14.84□□□□□ -0.03
SUMO3P55854 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SUMO3P55854 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.83□□□□□ -0.03
SUMO3P55854 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SUMO3P55854 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
SUMO3P55854 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SUMO3P55854 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.83□□□□□ -0.03
SUMO3P55854 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
SUMO3P55854 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SUMO3P55854 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.03
SUMO3P55854 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SUMO3P55854 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 FOXO1B-201ENST00000504678 1527 ntBASIC14.83□□□□□ -0.04
SUMO3P55854 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SUMO3P55854 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.83□□□□□ -0.04
SUMO3P55854 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.83□□□□□ -0.04
SUMO3P55854 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 AC004461.1-201ENST00000412461 403 ntBASIC14.83□□□□□ -0.04
SUMO3P55854 AL627223.1-201ENST00000416693 442 ntBASIC14.83□□□□□ -0.04
SUMO3P55854 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 AC005237.2-201ENST00000434368 219 ntBASIC14.83□□□□□ -0.04
SUMO3P55854 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.83□□□□□ -0.04
SUMO3P55854 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.83□□□□□ -0.04
SUMO3P55854 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.83□□□□□ -0.04
SUMO3P55854 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.83□□□□□ -0.04
SUMO3P55854 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SUMO3P55854 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.83□□□□□ -0.04
SUMO3P55854 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SUMO3P55854 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SUMO3P55854 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.82□□□□□ -0.04
SUMO3P55854 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SUMO3P55854 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SUMO3P55854 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SUMO3P55854 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.82□□□□□ -0.04
SUMO3P55854 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SUMO3P55854 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SUMO3P55854 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SUMO3P55854 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms