Protein–RNA interactions for Protein: P42898

MTHFR, Methylenetetrahydrofolate reductase, humanhuman

Predictions only

Length 656 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFRP42898 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.12■□□□□ 0.33
MTHFRP42898 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
MTHFRP42898 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.12■□□□□ 0.33
MTHFRP42898 MYCLP2-201ENST00000449268 967 ntBASIC17.12■□□□□ 0.33
MTHFRP42898 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.12■□□□□ 0.33
MTHFRP42898 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MTHFRP42898 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.12■□□□□ 0.33
MTHFRP42898 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MTHFRP42898 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 AC013467.2-201ENST00000605472 835 ntBASIC17.12■□□□□ 0.33
MTHFRP42898 AC099568.2-201ENST00000609194 695 ntBASIC17.12■□□□□ 0.33
MTHFRP42898 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.12■□□□□ 0.33
MTHFRP42898 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.12■□□□□ 0.33
MTHFRP42898 AL033527.5-202ENST00000641632 1098 ntBASIC17.12■□□□□ 0.33
MTHFRP42898 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
MTHFRP42898 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.12■□□□□ 0.33
MTHFRP42898 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MTHFRP42898 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
MTHFRP42898 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
MTHFRP42898 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.12■□□□□ 0.33
MTHFRP42898 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
MTHFRP42898 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
MTHFRP42898 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.11■□□□□ 0.33
MTHFRP42898 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.11■□□□□ 0.33
MTHFRP42898 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 SPDYE18-201ENST00000510091 1050 ntBASIC17.11■□□□□ 0.33
MTHFRP42898 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MTHFRP42898 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.11■□□□□ 0.33
MTHFRP42898 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MTHFRP42898 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
MTHFRP42898 KRT8P12-202ENST00000472924 1397 ntBASIC17.11■□□□□ 0.33
MTHFRP42898 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
MTHFRP42898 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MTHFRP42898 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
MTHFRP42898 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
MTHFRP42898 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.1■□□□□ 0.33
MTHFRP42898 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.1■□□□□ 0.33
MTHFRP42898 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MTHFRP42898 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 AC234783.1-201ENST00000441761 496 ntBASIC17.1■□□□□ 0.33
MTHFRP42898 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.1■□□□□ 0.33
MTHFRP42898 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.1■□□□□ 0.33
MTHFRP42898 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.1■□□□□ 0.33
MTHFRP42898 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.1■□□□□ 0.33
MTHFRP42898 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.1■□□□□ 0.33
MTHFRP42898 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.1■□□□□ 0.33
MTHFRP42898 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MTHFRP42898 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.1■□□□□ 0.33
MTHFRP42898 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms