Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.97■□□□□ 0.15
TNFP01375 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.97■□□□□ 0.15
TNFP01375 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
TNFP01375 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.96■□□□□ 0.15
TNFP01375 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.96■□□□□ 0.15
TNFP01375 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
TNFP01375 AL139010.1-201ENST00000454878 894 ntBASIC15.96■□□□□ 0.15
TNFP01375 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 POU5F1P6-201ENST00000466990 990 ntBASIC15.96■□□□□ 0.15
TNFP01375 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.96■□□□□ 0.15
TNFP01375 SERBP1P5-201ENST00000510079 1181 ntBASIC15.96■□□□□ 0.15
TNFP01375 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.96■□□□□ 0.15
TNFP01375 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
TNFP01375 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TNFP01375 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TNFP01375 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.96■□□□□ 0.14
TNFP01375 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.96■□□□□ 0.14
TNFP01375 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TNFP01375 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.96■□□□□ 0.14
TNFP01375 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.14
TNFP01375 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
TNFP01375 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TNFP01375 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
TNFP01375 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.95■□□□□ 0.14
TNFP01375 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.95■□□□□ 0.14
TNFP01375 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TNFP01375 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.95■□□□□ 0.14
TNFP01375 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.95■□□□□ 0.14
TNFP01375 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TNFP01375 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.95■□□□□ 0.14
TNFP01375 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.95■□□□□ 0.14
TNFP01375 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.95■□□□□ 0.14
TNFP01375 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.95■□□□□ 0.14
TNFP01375 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms