Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 NKILA-202ENST00000614771 2598 ntBASIC14.8□□□□□ -0.04
CPNE4Q96A23 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 AC004461.1-201ENST00000412461 403 ntBASIC14.79□□□□□ -0.04
CPNE4Q96A23 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 AL592309.1-201ENST00000443127 649 ntBASIC14.79□□□□□ -0.04
CPNE4Q96A23 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 AP001160.2-201ENST00000596071 487 ntBASIC14.79□□□□□ -0.04
CPNE4Q96A23 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 AL596442.2-201ENST00000610240 980 ntBASIC14.79□□□□□ -0.04
CPNE4Q96A23 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 PCGF3-213ENST00000620529 1899 ntBASIC14.79□□□□□ -0.04
CPNE4Q96A23 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CPNE4Q96A23 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CPNE4Q96A23 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 LINC01144-201ENST00000626198 1710 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 GGT3P-204ENST00000453783 1664 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 SPCS2P4-201ENST00000436160 681 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 PRYP6-201ENST00000514804 343 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 AC105233.2-201ENST00000523697 349 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AF228730.5-201ENST00000530288 346 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CPNE4Q96A23 AC011676.5-201ENST00000624864 2660 ntBASIC14.78□□□□□ -0.04
CPNE4Q96A23 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.78□□□□□ -0.04
CPNE4Q96A23 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CPNE4Q96A23 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.77□□□□□ -0.04
CPNE4Q96A23 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.77□□□□□ -0.04
CPNE4Q96A23 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CPNE4Q96A23 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CPNE4Q96A23 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms