Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 KLF4P1-201ENST00000412782 1185 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AC079781.3-201ENST00000449110 356 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 FDX1P1-201ENST00000449115 551 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AC093909.1-201ENST00000504731 1122 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AL603832.2-201ENST00000566195 2125 ntBASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
DEPDC4Q8N2C3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 INTS4P1-201ENST00000438455 1935 ntBASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RPS2P28-201ENST00000314255 741 ntBASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 AP002469.2-201ENST00000531724 424 ntBASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.39■□□□□ 0.05
DEPDC4Q8N2C3 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms