Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC144BQ3MJ40 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 BASP1P1-201ENST00000430708 665 ntBASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AC109635.5-201ENST00000533593 962 ntBASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 KRT8P23-201ENST00000560090 1207 ntBASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AC026150.2-201ENST00000564693 1156 ntBASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 AL353732.1-201ENST00000569618 1459 ntBASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 BANP-201ENST00000286122 2368 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC144BQ3MJ40 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 AC008677.1-201ENST00000519230 1561 ntBASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 AC107890.1-201ENST00000422478 521 ntBASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 AC125807.1-201ENST00000483097 614 ntBASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms