Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.23■□□□□ 0.19
SRP54P61011 IGHV3-42-201ENST00000520410 361 ntBASIC16.23■□□□□ 0.19
SRP54P61011 AC069120.2-201ENST00000524091 540 ntBASIC16.23■□□□□ 0.19
SRP54P61011 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.23■□□□□ 0.19
SRP54P61011 AC003101.2-201ENST00000612557 442 ntBASIC16.23■□□□□ 0.19
SRP54P61011 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SRP54P61011 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SRP54P61011 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.23■□□□□ 0.19
SRP54P61011 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
SRP54P61011 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SRP54P61011 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SRP54P61011 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 HLA-H-201ENST00000383620 1096 ntBASIC16.22■□□□□ 0.19
SRP54P61011 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SRP54P61011 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
SRP54P61011 INGX-202ENST00000489074 768 ntBASIC16.22■□□□□ 0.19
SRP54P61011 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.22■□□□□ 0.19
SRP54P61011 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.22■□□□□ 0.19
SRP54P61011 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.22■□□□□ 0.19
SRP54P61011 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.22■□□□□ 0.19
SRP54P61011 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.22■□□□□ 0.19
SRP54P61011 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.22■□□□□ 0.19
SRP54P61011 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SRP54P61011 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SRP54P61011 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
SRP54P61011 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 AP001094.4-201ENST00000579008 2176 ntBASIC16.21■□□□□ 0.19
SRP54P61011 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.21■□□□□ 0.19
SRP54P61011 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.21■□□□□ 0.19
SRP54P61011 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.21■□□□□ 0.19
SRP54P61011 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 AC098859.1-201ENST00000502915 1238 ntBASIC16.21■□□□□ 0.19
SRP54P61011 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.21■□□□□ 0.19
SRP54P61011 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.21■□□□□ 0.19
SRP54P61011 AL158211.3-201ENST00000607385 239 ntBASIC16.21■□□□□ 0.19
SRP54P61011 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SRP54P61011 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SRP54P61011 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.21■□□□□ 0.19
SRP54P61011 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
SRP54P61011 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
SRP54P61011 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SRP54P61011 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.21■□□□□ 0.18
SRP54P61011 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SRP54P61011 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SRP54P61011 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SRP54P61011 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms