Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 MIR326-201ENST00000362220 95 ntBASIC16.77■□□□□ 0.28
COL9A1P20849 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.77■□□□□ 0.28
COL9A1P20849 AC104784.1-201ENST00000473096 294 ntBASIC16.77■□□□□ 0.28
COL9A1P20849 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC16.77■□□□□ 0.28
COL9A1P20849 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.77■□□□□ 0.28
COL9A1P20849 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.77■□□□□ 0.28
COL9A1P20849 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.77■□□□□ 0.28
COL9A1P20849 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.77■□□□□ 0.28
COL9A1P20849 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.77■□□□□ 0.28
COL9A1P20849 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC16.77■□□□□ 0.28
COL9A1P20849 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
COL9A1P20849 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL9A1P20849 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL9A1P20849 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL9A1P20849 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
COL9A1P20849 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL9A1P20849 AC007613.1-201ENST00000572811 2597 ntBASIC16.77■□□□□ 0.27
COL9A1P20849 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL9A1P20849 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 AL671710.1-201ENST00000610245 2349 ntBASIC16.76■□□□□ 0.27
COL9A1P20849 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC16.76■□□□□ 0.27
COL9A1P20849 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.76■□□□□ 0.27
COL9A1P20849 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.76■□□□□ 0.27
COL9A1P20849 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.76■□□□□ 0.27
COL9A1P20849 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 AC025048.3-201ENST00000590609 569 ntBASIC16.76■□□□□ 0.27
COL9A1P20849 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.76■□□□□ 0.27
COL9A1P20849 AL136301.1-201ENST00000615830 422 ntBASIC16.76■□□□□ 0.27
COL9A1P20849 AL353726.2-201ENST00000623259 884 ntBASIC16.76■□□□□ 0.27
COL9A1P20849 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.76■□□□□ 0.27
COL9A1P20849 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL9A1P20849 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL9A1P20849 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.75■□□□□ 0.27
COL9A1P20849 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL9A1P20849 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.75■□□□□ 0.27
COL9A1P20849 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL9A1P20849 AL080243.2-201ENST00000418783 582 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.75■□□□□ 0.27
COL9A1P20849 AL079307.3-201ENST00000556114 283 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.75■□□□□ 0.27
COL9A1P20849 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 RN7SL121P-201ENST00000584223 273 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 AC145423.3-201ENST00000615987 467 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 AC138627.1-207ENST00000641560 1006 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 AL607033.1-201ENST00000623900 1599 ntBASIC16.75■□□□□ 0.27
COL9A1P20849 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.75■□□□□ 0.27
COL9A1P20849 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL9A1P20849 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms