Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.28■□□□□ 0.68
HLA-DOAP06340 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 AL139010.1-201ENST00000454878 894 ntBASIC19.28■□□□□ 0.68
HLA-DOAP06340 AL365330.1-201ENST00000607459 531 ntBASIC19.28■□□□□ 0.68
HLA-DOAP06340 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 SPTLC1P1-201ENST00000447199 261 ntBASIC19.27■□□□□ 0.68
HLA-DOAP06340 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 AC012645.4-201ENST00000610691 1061 ntBASIC19.27■□□□□ 0.68
HLA-DOAP06340 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 LETM1P2-201ENST00000597330 2178 ntBASIC19.27■□□□□ 0.68
HLA-DOAP06340 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DOAP06340 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HLA-DOAP06340 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HLA-DOAP06340 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
HLA-DOAP06340 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HLA-DOAP06340 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HLA-DOAP06340 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
HLA-DOAP06340 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 RNF216P1-203ENST00000404404 2427 ntBASIC19.26■□□□□ 0.67
HLA-DOAP06340 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.26■□□□□ 0.67
HLA-DOAP06340 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 ZNF890P-202ENST00000530367 1156 ntBASIC19.26■□□□□ 0.67
HLA-DOAP06340 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 AC005225.4-201ENST00000557330 545 ntBASIC19.26■□□□□ 0.67
HLA-DOAP06340 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DOAP06340 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.26■□□□□ 0.67
HLA-DOAP06340 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.25■□□□□ 0.67
HLA-DOAP06340 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms