Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.61■□□□□ 0.09
CLPTM1O96005 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.61■□□□□ 0.09
CLPTM1O96005 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.61■□□□□ 0.09
CLPTM1O96005 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CLPTM1O96005 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.61■□□□□ 0.09
CLPTM1O96005 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLPTM1O96005 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CLPTM1O96005 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.61■□□□□ 0.09
CLPTM1O96005 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.61■□□□□ 0.09
CLPTM1O96005 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 FRMD8P1-201ENST00000440433 1524 ntBASIC15.6■□□□□ 0.09
CLPTM1O96005 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 IGHGP-201ENST00000390555 1178 ntBASIC15.6■□□□□ 0.09
CLPTM1O96005 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 AC002558.1-201ENST00000488906 803 ntBASIC15.6■□□□□ 0.09
CLPTM1O96005 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.6■□□□□ 0.09
CLPTM1O96005 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.6■□□□□ 0.09
CLPTM1O96005 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.6■□□□□ 0.09
CLPTM1O96005 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.6■□□□□ 0.09
CLPTM1O96005 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.6■□□□□ 0.09
CLPTM1O96005 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.6■□□□□ 0.09
CLPTM1O96005 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.6■□□□□ 0.09
CLPTM1O96005 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.6■□□□□ 0.09
CLPTM1O96005 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLPTM1O96005 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.59■□□□□ 0.09
CLPTM1O96005 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.59■□□□□ 0.09
CLPTM1O96005 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CLPTM1O96005 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 KRT18P65-201ENST00000439811 1286 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 HLA-J-202ENST00000469281 1241 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.59■□□□□ 0.09
CLPTM1O96005 GPR32P1-201ENST00000601788 811 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 AL390719.2-201ENST00000606993 987 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms