Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 AC015656.1-201ENST00000624209 3578 ntBASIC16.49■□□□□ 0.23
SHOX2O60902 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.48■□□□□ 0.23
SHOX2O60902 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SHOX2O60902 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.48■□□□□ 0.23
SHOX2O60902 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SHOX2O60902 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 TMEM191A-211ENST00000637163 1067 ntBASIC16.48■□□□□ 0.23
SHOX2O60902 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 AC010327.5-201ENST00000586923 3061 ntBASIC16.48■□□□□ 0.23
SHOX2O60902 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SHOX2O60902 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.48■□□□□ 0.23
SHOX2O60902 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.48■□□□□ 0.23
SHOX2O60902 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHOX2O60902 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 BEND3P1-201ENST00000421591 1944 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 AC125634.1-201ENST00000438758 1403 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SHOX2O60902 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 MMP23A-201ENST00000234610 1017 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.47■□□□□ 0.23
SHOX2O60902 HMGA1P5-201ENST00000412453 271 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 KLF4P1-201ENST00000412782 1185 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
SHOX2O60902 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.47■□□□□ 0.23
SHOX2O60902 MIR4497-201ENST00000583208 89 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.47■□□□□ 0.23
SHOX2O60902 AP006294.2-201ENST00000641667 209 ntBASIC16.47■□□□□ 0.23
SHOX2O60902 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.47■□□□□ 0.23
SHOX2O60902 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SHOX2O60902 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SHOX2O60902 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHOX2O60902 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHOX2O60902 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
SHOX2O60902 AC148477.4-201ENST00000613430 1793 ntBASIC16.46■□□□□ 0.23
SHOX2O60902 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SHOX2O60902 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms