Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.1
PROM1O43490 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.64■□□□□ 0.09
PROM1O43490 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.64■□□□□ 0.09
PROM1O43490 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PROM1O43490 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.64■□□□□ 0.09
PROM1O43490 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.64■□□□□ 0.09
PROM1O43490 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.64■□□□□ 0.09
PROM1O43490 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PROM1O43490 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PROM1O43490 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PROM1O43490 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
PROM1O43490 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PROM1O43490 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.63■□□□□ 0.09
PROM1O43490 AC092364.2-201ENST00000596710 2692 ntBASIC15.63■□□□□ 0.09
PROM1O43490 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 AC002056.1-201ENST00000395613 760 ntBASIC15.63■□□□□ 0.09
PROM1O43490 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.63■□□□□ 0.09
PROM1O43490 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 AC112191.1-201ENST00000523689 701 ntBASIC15.63■□□□□ 0.09
PROM1O43490 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.63■□□□□ 0.09
PROM1O43490 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 AC002347.1-201ENST00000569543 541 ntBASIC15.63■□□□□ 0.09
PROM1O43490 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.63■□□□□ 0.09
PROM1O43490 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.63■□□□□ 0.09
PROM1O43490 AL161645.1-201ENST00000622716 1255 ntBASIC15.63■□□□□ 0.09
PROM1O43490 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.63■□□□□ 0.09
PROM1O43490 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.63■□□□□ 0.09
PROM1O43490 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PROM1O43490 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
PROM1O43490 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PROM1O43490 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.62■□□□□ 0.09
PROM1O43490 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms