Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.4■■■□□ 2.62
SHANK3Q9BYB0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHANK3Q9BYB0 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
SHANK3Q9BYB0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SHANK3Q9BYB0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
SHANK3Q9BYB0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHANK3Q9BYB0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 MIR3621-201ENST00000580529 85 ntBASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 MTDHP2-201ENST00000601468 714 ntBASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.38■■■□□ 2.61
SHANK3Q9BYB0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHANK3Q9BYB0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.37■■■□□ 2.61
SHANK3Q9BYB0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
SHANK3Q9BYB0 RASSF1-AS1-201ENST00000629828 790 ntBASIC31.37■■■□□ 2.61
SHANK3Q9BYB0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.37■■■□□ 2.61
SHANK3Q9BYB0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHANK3Q9BYB0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SHANK3Q9BYB0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SHANK3Q9BYB0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.35■■■□□ 2.61
SHANK3Q9BYB0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
SHANK3Q9BYB0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.35■■■□□ 2.61
SHANK3Q9BYB0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHANK3Q9BYB0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC31.35■■■□□ 2.61
SHANK3Q9BYB0 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 AC010997.5-201ENST00000609182 354 ntBASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC31.34■■■□□ 2.61
SHANK3Q9BYB0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHANK3Q9BYB0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.33■■■□□ 2.61
SHANK3Q9BYB0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.33■■■□□ 2.61
SHANK3Q9BYB0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC31.32■■■□□ 2.61
SHANK3Q9BYB0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 AF131216.4-201ENST00000638924 1588 ntBASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 AC139426.1-201ENST00000568218 2529 ntBASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.32■■■□□ 2.6
SHANK3Q9BYB0 AP004609.3-201ENST00000610705 1884 ntBASIC31.31■■■□□ 2.6
SHANK3Q9BYB0 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHANK3Q9BYB0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHANK3Q9BYB0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
SHANK3Q9BYB0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHANK3Q9BYB0 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.29■■■□□ 2.6
SHANK3Q9BYB0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHANK3Q9BYB0 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.28■■■□□ 2.6
SHANK3Q9BYB0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHANK3Q9BYB0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.27■■■□□ 2.6
SHANK3Q9BYB0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.27■■■□□ 2.6
SHANK3Q9BYB0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SHANK3Q9BYB0 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.27■■■□□ 2.6
SHANK3Q9BYB0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHANK3Q9BYB0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.25■■■□□ 2.59
SHANK3Q9BYB0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 AC096631.2-201ENST00000436136 790 ntBASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.24■■■□□ 2.59
SHANK3Q9BYB0 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHANK3Q9BYB0 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
SHANK3Q9BYB0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHANK3Q9BYB0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.23■■■□□ 2.59
SHANK3Q9BYB0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHANK3Q9BYB0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHANK3Q9BYB0 CD72-202ENST00000378430 585 ntTSL 3 BASIC31.21■■■□□ 2.59
SHANK3Q9BYB0 SNX5-217ENST00000606557 1087 ntBASIC31.21■■■□□ 2.59
SHANK3Q9BYB0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SHANK3Q9BYB0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.2■■■□□ 2.58
SHANK3Q9BYB0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.2■■■□□ 2.58
SHANK3Q9BYB0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms