Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL12A1Q99715 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL12A1Q99715 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL12A1Q99715 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.17■□□□□ 0.98
COL12A1Q99715 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.17■□□□□ 0.98
COL12A1Q99715 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.17■□□□□ 0.98
COL12A1Q99715 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.17■□□□□ 0.98
COL12A1Q99715 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL12A1Q99715 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL12A1Q99715 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL12A1Q99715 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.16■□□□□ 0.98
COL12A1Q99715 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL12A1Q99715 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.16■□□□□ 0.98
COL12A1Q99715 MTDHP2-201ENST00000601468 714 ntBASIC21.16■□□□□ 0.98
COL12A1Q99715 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.16■□□□□ 0.98
COL12A1Q99715 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL12A1Q99715 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL12A1Q99715 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL12A1Q99715 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL12A1Q99715 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL12A1Q99715 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.15■□□□□ 0.98
COL12A1Q99715 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL12A1Q99715 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL12A1Q99715 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL12A1Q99715 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL12A1Q99715 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
COL12A1Q99715 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL12A1Q99715 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL12A1Q99715 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL12A1Q99715 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL12A1Q99715 AC092437.1-201ENST00000624794 1048 ntBASIC21.13■□□□□ 0.97
COL12A1Q99715 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.13■□□□□ 0.97
COL12A1Q99715 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.13■□□□□ 0.97
COL12A1Q99715 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL12A1Q99715 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.13■□□□□ 0.97
COL12A1Q99715 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL12A1Q99715 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL12A1Q99715 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL12A1Q99715 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.12■□□□□ 0.97
COL12A1Q99715 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.12■□□□□ 0.97
COL12A1Q99715 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.12■□□□□ 0.97
COL12A1Q99715 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.12■□□□□ 0.97
COL12A1Q99715 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COL12A1Q99715 AF213884.3-201ENST00000563833 479 ntBASIC21.12■□□□□ 0.97
COL12A1Q99715 AL136162.1-201ENST00000607711 1078 ntBASIC21.12■□□□□ 0.97
COL12A1Q99715 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL12A1Q99715 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL12A1Q99715 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL12A1Q99715 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL12A1Q99715 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.11■□□□□ 0.97
COL12A1Q99715 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL12A1Q99715 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.11■□□□□ 0.97
COL12A1Q99715 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.1■□□□□ 0.97
COL12A1Q99715 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL12A1Q99715 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.1■□□□□ 0.97
COL12A1Q99715 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.1■□□□□ 0.97
COL12A1Q99715 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
COL12A1Q99715 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.1■□□□□ 0.97
COL12A1Q99715 AC091305.1-201ENST00000479476 895 ntBASIC21.1■□□□□ 0.97
COL12A1Q99715 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL12A1Q99715 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.1■□□□□ 0.97
COL12A1Q99715 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.1■□□□□ 0.97
COL12A1Q99715 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL12A1Q99715 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.09■□□□□ 0.97
COL12A1Q99715 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.09■□□□□ 0.97
COL12A1Q99715 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL12A1Q99715 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL12A1Q99715 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL12A1Q99715 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL12A1Q99715 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
COL12A1Q99715 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL12A1Q99715 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.08■□□□□ 0.96
COL12A1Q99715 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL12A1Q99715 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL12A1Q99715 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.07■□□□□ 0.96
COL12A1Q99715 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.07■□□□□ 0.96
COL12A1Q99715 RASA4CP-201ENST00000424092 1398 ntBASIC21.07■□□□□ 0.96
COL12A1Q99715 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL12A1Q99715 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL12A1Q99715 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.06■□□□□ 0.96
COL12A1Q99715 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.06■□□□□ 0.96
COL12A1Q99715 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL12A1Q99715 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL12A1Q99715 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL12A1Q99715 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL12A1Q99715 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
COL12A1Q99715 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.05■□□□□ 0.96
COL12A1Q99715 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL12A1Q99715 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL12A1Q99715 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.05■□□□□ 0.96
COL12A1Q99715 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL12A1Q99715 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL12A1Q99715 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
COL12A1Q99715 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms