Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CPNE4Q96A23 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.31■■□□□ 1
CPNE4Q96A23 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CPNE4Q96A23 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.31■■□□□ 1
CPNE4Q96A23 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPNE4Q96A23 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.31■■□□□ 1
CPNE4Q96A23 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.3■■□□□ 1
CPNE4Q96A23 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE4Q96A23 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE4Q96A23 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE4Q96A23 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE4Q96A23 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE4Q96A23 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CPNE4Q96A23 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE4Q96A23 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.29■■□□□ 1
CPNE4Q96A23 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE4Q96A23 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.29■■□□□ 1
CPNE4Q96A23 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CPNE4Q96A23 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.28■■□□□ 1
CPNE4Q96A23 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
CPNE4Q96A23 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPNE4Q96A23 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.28■■□□□ 1
CPNE4Q96A23 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.28■■□□□ 1
CPNE4Q96A23 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE4Q96A23 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.28■■□□□ 1
CPNE4Q96A23 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE4Q96A23 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.27■■□□□ 1
CPNE4Q96A23 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPNE4Q96A23 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE4Q96A23 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.27■■□□□ 1
CPNE4Q96A23 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE4Q96A23 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.26■□□□□ 0.99
CPNE4Q96A23 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE4Q96A23 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.26■□□□□ 0.99
CPNE4Q96A23 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE4Q96A23 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
CPNE4Q96A23 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.25■□□□□ 0.99
CPNE4Q96A23 AC022616.5-201ENST00000518796 181 ntBASIC21.25■□□□□ 0.99
CPNE4Q96A23 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.25■□□□□ 0.99
CPNE4Q96A23 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE4Q96A23 PVT1_1.1-201ENST00000615125 194 ntBASIC21.25■□□□□ 0.99
CPNE4Q96A23 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.25■□□□□ 0.99
CPNE4Q96A23 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CPNE4Q96A23 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE4Q96A23 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CPNE4Q96A23 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 YBX1P4-201ENST00000392794 808 ntBASIC21.24■□□□□ 0.99
CPNE4Q96A23 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.24■□□□□ 0.99
CPNE4Q96A23 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE4Q96A23 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CPNE4Q96A23 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPNE4Q96A23 MIR4508-201ENST00000584178 70 ntBASIC21.23■□□□□ 0.99
CPNE4Q96A23 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPNE4Q96A23 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPNE4Q96A23 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPNE4Q96A23 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPNE4Q96A23 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CPNE4Q96A23 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.22■□□□□ 0.99
CPNE4Q96A23 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.22■□□□□ 0.99
CPNE4Q96A23 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPNE4Q96A23 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPNE4Q96A23 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPNE4Q96A23 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPNE4Q96A23 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPNE4Q96A23 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.21■□□□□ 0.99
CPNE4Q96A23 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPNE4Q96A23 AL592295.1-201ENST00000400984 884 ntBASIC21.21■□□□□ 0.99
CPNE4Q96A23 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPNE4Q96A23 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
CPNE4Q96A23 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.2■□□□□ 0.98
CPNE4Q96A23 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.2■□□□□ 0.98
CPNE4Q96A23 KRT8P33-201ENST00000508125 1423 ntBASIC21.2■□□□□ 0.98
CPNE4Q96A23 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CPNE4Q96A23 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.19■□□□□ 0.98
CPNE4Q96A23 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPNE4Q96A23 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 FOXO3B-201ENST00000395675 1928 ntBASIC21.18■□□□□ 0.98
CPNE4Q96A23 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CPNE4Q96A23 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CPNE4Q96A23 RARRES2P1-201ENST00000474487 481 ntBASIC21.18■□□□□ 0.98
CPNE4Q96A23 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CPNE4Q96A23 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPNE4Q96A23 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms