Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC127502.1-201ENST00000399971 1502 ntBASIC18.95■□□□□ 0.62
CLRN3Q8NCR9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN3Q8NCR9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 AC092667.1-201ENST00000434301 2586 ntBASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.93■□□□□ 0.62
CLRN3Q8NCR9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.92■□□□□ 0.62
CLRN3Q8NCR9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CLRN3Q8NCR9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.9■□□□□ 0.62
CLRN3Q8NCR9 AC233723.2-201ENST00000623798 2106 ntBASIC18.89■□□□□ 0.62
CLRN3Q8NCR9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.89■□□□□ 0.62
CLRN3Q8NCR9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.89■□□□□ 0.61
CLRN3Q8NCR9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN3Q8NCR9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN3Q8NCR9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CLRN3Q8NCR9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms