Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SLC44A3Q8N4M1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.63■■□□□ 1.53
SLC44A3Q8N4M1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.63■■□□□ 1.53
SLC44A3Q8N4M1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.62■■□□□ 1.53
SLC44A3Q8N4M1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.62■■□□□ 1.53
SLC44A3Q8N4M1 AC133561.4-201ENST00000566112 224 ntBASIC24.62■■□□□ 1.53
SLC44A3Q8N4M1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SLC44A3Q8N4M1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.61■■□□□ 1.53
SLC44A3Q8N4M1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SLC44A3Q8N4M1 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 LINC01003-201ENST00000564834 1764 ntBASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.59■■□□□ 1.53
SLC44A3Q8N4M1 DRD5P2-201ENST00000421395 2012 ntBASIC24.58■■□□□ 1.53
SLC44A3Q8N4M1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.58■■□□□ 1.53
SLC44A3Q8N4M1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
SLC44A3Q8N4M1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SLC44A3Q8N4M1 AC142472.1-201ENST00000612013 1741 ntBASIC24.58■■□□□ 1.52
SLC44A3Q8N4M1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 AC011551.1-201ENST00000614101 683 ntBASIC24.57■■□□□ 1.52
SLC44A3Q8N4M1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 AL512631.2-201ENST00000604634 923 ntBASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC44A3Q8N4M1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
SLC44A3Q8N4M1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SLC44A3Q8N4M1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.55■■□□□ 1.52
SLC44A3Q8N4M1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SLC44A3Q8N4M1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SLC44A3Q8N4M1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SLC44A3Q8N4M1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
SLC44A3Q8N4M1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SLC44A3Q8N4M1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
SLC44A3Q8N4M1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.52■■□□□ 1.52
SLC44A3Q8N4M1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.52■■□□□ 1.52
SLC44A3Q8N4M1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SLC44A3Q8N4M1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
SLC44A3Q8N4M1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.51■■□□□ 1.51
SLC44A3Q8N4M1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
SLC44A3Q8N4M1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
SLC44A3Q8N4M1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.5■■□□□ 1.51
SLC44A3Q8N4M1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SLC44A3Q8N4M1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SLC44A3Q8N4M1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SLC44A3Q8N4M1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SLC44A3Q8N4M1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SLC44A3Q8N4M1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SLC44A3Q8N4M1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24.48■■□□□ 1.51
SLC44A3Q8N4M1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.48■■□□□ 1.51
SLC44A3Q8N4M1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.48■■□□□ 1.51
SLC44A3Q8N4M1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 ZNRF2P3-201ENST00000424200 374 ntBASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 AC106739.1-201ENST00000617035 715 ntBASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
SLC44A3Q8N4M1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 PBX2P1-201ENST00000493219 1291 ntBASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms