Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD4Q6ZW05 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD4Q6ZW05 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD4Q6ZW05 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
PTCHD4Q6ZW05 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.7■■□□□ 1.06
PTCHD4Q6ZW05 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD4Q6ZW05 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.68■■□□□ 1.06
PTCHD4Q6ZW05 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD4Q6ZW05 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD4Q6ZW05 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD4Q6ZW05 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD4Q6ZW05 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD4Q6ZW05 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD4Q6ZW05 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD4Q6ZW05 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PTCHD4Q6ZW05 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD4Q6ZW05 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD4Q6ZW05 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD4Q6ZW05 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCHD4Q6ZW05 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD4Q6ZW05 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PTCHD4Q6ZW05 AC097639.1-201ENST00000565519 1891 ntBASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 AC012676.1-201ENST00000574705 1949 ntBASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD4Q6ZW05 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 SLC6A10P-202ENST00000431994 2058 ntBASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 AC126177.7-201ENST00000547904 679 ntBASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 LINC00543-201ENST00000567234 1845 ntBASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD4Q6ZW05 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD4Q6ZW05 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms