Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 KRT16P3-201ENST00000439127 1283 ntBASIC21.75■■□□□ 1.07
RPUSD3Q6P087 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.74■■□□□ 1.07
RPUSD3Q6P087 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RPUSD3Q6P087 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.72■■□□□ 1.07
RPUSD3Q6P087 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.72■■□□□ 1.07
RPUSD3Q6P087 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RPUSD3Q6P087 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RPUSD3Q6P087 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPUSD3Q6P087 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.71■■□□□ 1.07
RPUSD3Q6P087 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.71■■□□□ 1.07
RPUSD3Q6P087 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPUSD3Q6P087 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
RPUSD3Q6P087 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 AC092028.1-203ENST00000608262 953 ntBASIC21.7■■□□□ 1.06
RPUSD3Q6P087 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 AP004609.3-201ENST00000610705 1884 ntBASIC21.7■■□□□ 1.06
RPUSD3Q6P087 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPUSD3Q6P087 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPUSD3Q6P087 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.68■■□□□ 1.06
RPUSD3Q6P087 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPUSD3Q6P087 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPUSD3Q6P087 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
RPUSD3Q6P087 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPUSD3Q6P087 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 MIR4281-201ENST00000580852 62 ntBASIC21.67■■□□□ 1.06
RPUSD3Q6P087 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RPUSD3Q6P087 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 AC011551.1-201ENST00000614101 683 ntBASIC21.66■■□□□ 1.06
RPUSD3Q6P087 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.66■■□□□ 1.06
RPUSD3Q6P087 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPUSD3Q6P087 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPUSD3Q6P087 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RPUSD3Q6P087 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPUSD3Q6P087 TSPY9P-201ENST00000440215 945 ntBASIC21.64■■□□□ 1.05
RPUSD3Q6P087 TSPY11P-201ENST00000442607 1045 ntBASIC21.64■■□□□ 1.05
RPUSD3Q6P087 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPUSD3Q6P087 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RPUSD3Q6P087 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RPUSD3Q6P087 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.05
RPUSD3Q6P087 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPUSD3Q6P087 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RPUSD3Q6P087 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RPUSD3Q6P087 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.62■■□□□ 1.05
RPUSD3Q6P087 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RPUSD3Q6P087 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RPUSD3Q6P087 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms