Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PTCHD3Q3KNS1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.18■■□□□ 1.3
PTCHD3Q3KNS1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD3Q3KNS1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
PTCHD3Q3KNS1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 RARRES2P1-201ENST00000474487 481 ntBASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD3Q3KNS1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PTCHD3Q3KNS1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
PTCHD3Q3KNS1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.14■■□□□ 1.29
PTCHD3Q3KNS1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 BHLHE23-202ENST00000612929 1109 ntBASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 MIR6765-201ENST00000614092 87 ntBASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 AC022211.4-201ENST00000625094 2161 ntBASIC23.13■■□□□ 1.29
PTCHD3Q3KNS1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
PTCHD3Q3KNS1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PTCHD3Q3KNS1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PTCHD3Q3KNS1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.12■■□□□ 1.29
PTCHD3Q3KNS1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 AC018755.3-202ENST00000596210 929 ntBASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.11■■□□□ 1.29
PTCHD3Q3KNS1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.1■■□□□ 1.29
PTCHD3Q3KNS1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
PTCHD3Q3KNS1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.1■■□□□ 1.29
PTCHD3Q3KNS1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.1■■□□□ 1.29
PTCHD3Q3KNS1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
PTCHD3Q3KNS1 SLC6A10P-202ENST00000431994 2058 ntBASIC23.09■■□□□ 1.29
PTCHD3Q3KNS1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 AC010980.1-201ENST00000587192 1142 ntBASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 AC142381.3-201ENST00000568208 1670 ntBASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTCHD3Q3KNS1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PTCHD3Q3KNS1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD3Q3KNS1 AC139795.1-202ENST00000500444 432 ntBASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms