Protein–RNA interactions for Protein: P54105

CLNS1A, Methylosome subunit pICln, humanhuman

Known RBP Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1AP54105 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L13-201ENST00000554103 1267 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L15-201ENST00000611059 1267 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L23-201ENST00000615195 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L24-201ENST00000617576 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L22-201ENST00000618238 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L20-201ENST00000619712 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L21-201ENST00000622058 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L10-201ENST00000622460 1267 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 DUX4L25-201ENST00000624915 1269 ntBASIC23.32■■□□□ 1.32
CLNS1AP54105 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.32■■□□□ 1.32
CLNS1AP54105 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLNS1AP54105 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CLNS1AP54105 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.31■■□□□ 1.32
CLNS1AP54105 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.31■■□□□ 1.32
CLNS1AP54105 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CLNS1AP54105 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CLNS1AP54105 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CLNS1AP54105 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CLNS1AP54105 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.31■■□□□ 1.32
CLNS1AP54105 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CLNS1AP54105 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLNS1AP54105 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.3■■□□□ 1.32
CLNS1AP54105 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
CLNS1AP54105 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLNS1AP54105 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CLNS1AP54105 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLNS1AP54105 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLNS1AP54105 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLNS1AP54105 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CLNS1AP54105 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.28■■□□□ 1.32
CLNS1AP54105 AC010501.1-201ENST00000606270 1962 ntBASIC23.28■■□□□ 1.32
CLNS1AP54105 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLNS1AP54105 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
CLNS1AP54105 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.28■■□□□ 1.32
CLNS1AP54105 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLNS1AP54105 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
CLNS1AP54105 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.27■■□□□ 1.32
CLNS1AP54105 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.27■■□□□ 1.32
CLNS1AP54105 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLNS1AP54105 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.26■■□□□ 1.31
CLNS1AP54105 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLNS1AP54105 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLNS1AP54105 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLNS1AP54105 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLNS1AP54105 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.26■■□□□ 1.31
CLNS1AP54105 AC148477.6-201ENST00000623746 465 ntBASIC23.26■■□□□ 1.31
CLNS1AP54105 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLNS1AP54105 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.26■■□□□ 1.31
CLNS1AP54105 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CLNS1AP54105 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLNS1AP54105 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
CLNS1AP54105 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLNS1AP54105 RPS2P35-201ENST00000443417 897 ntBASIC23.25■■□□□ 1.31
CLNS1AP54105 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.25■■□□□ 1.31
CLNS1AP54105 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.25■■□□□ 1.31
CLNS1AP54105 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.25■■□□□ 1.31
CLNS1AP54105 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLNS1AP54105 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLNS1AP54105 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLNS1AP54105 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.24■■□□□ 1.31
CLNS1AP54105 MIR219A2-201ENST00000608502 1504 ntBASIC23.24■■□□□ 1.31
CLNS1AP54105 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLNS1AP54105 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLNS1AP54105 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CLNS1AP54105 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLNS1AP54105 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.23■■□□□ 1.31
CLNS1AP54105 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLNS1AP54105 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLNS1AP54105 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLNS1AP54105 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLNS1AP54105 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.23■■□□□ 1.31
CLNS1AP54105 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.22■■□□□ 1.31
CLNS1AP54105 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLNS1AP54105 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLNS1AP54105 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLNS1AP54105 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
CLNS1AP54105 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CLNS1AP54105 DUX4L11-201ENST00000611504 1267 ntBASIC23.22■■□□□ 1.31
CLNS1AP54105 DUX4L12-201ENST00000614593 1267 ntBASIC23.22■■□□□ 1.31
CLNS1AP54105 DUX4L14-201ENST00000621227 1267 ntBASIC23.22■■□□□ 1.31
CLNS1AP54105 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CLNS1AP54105 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
CLNS1AP54105 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms