Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CSB-PGBD3P0DP91 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.89■■■□□ 2.7
CSB-PGBD3P0DP91 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 AL356740.2-201ENST00000601559 647 ntBASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 AC110285.6-201ENST00000617652 491 ntBASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
CSB-PGBD3P0DP91 AP004609.3-201ENST00000610705 1884 ntBASIC31.87■■■□□ 2.69
CSB-PGBD3P0DP91 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CSB-PGBD3P0DP91 SENP5-202ENST00000419026 973 ntTSL 3 BASIC31.87■■■□□ 2.69
CSB-PGBD3P0DP91 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
CSB-PGBD3P0DP91 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CSB-PGBD3P0DP91 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC31.86■■■□□ 2.69
CSB-PGBD3P0DP91 AC096631.2-201ENST00000436136 790 ntBASIC31.85■■■□□ 2.69
CSB-PGBD3P0DP91 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
CSB-PGBD3P0DP91 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 AC011551.1-201ENST00000614101 683 ntBASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CSB-PGBD3P0DP91 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 MIR4466-201ENST00000606121 54 ntBASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CSB-PGBD3P0DP91 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 AC005837.3-201ENST00000612163 286 ntBASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.81■■■□□ 2.68
CSB-PGBD3P0DP91 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC31.8■■■□□ 2.68
CSB-PGBD3P0DP91 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.8■■■□□ 2.68
CSB-PGBD3P0DP91 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.8■■■□□ 2.68
CSB-PGBD3P0DP91 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
CSB-PGBD3P0DP91 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
CSB-PGBD3P0DP91 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CSB-PGBD3P0DP91 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
CSB-PGBD3P0DP91 AK3-203ENST00000447596 705 ntTSL 2 BASIC31.79■■■□□ 2.68
CSB-PGBD3P0DP91 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CSB-PGBD3P0DP91 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
CSB-PGBD3P0DP91 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC31.78■■■□□ 2.68
CSB-PGBD3P0DP91 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.78■■■□□ 2.68
CSB-PGBD3P0DP91 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.77■■■□□ 2.68
CSB-PGBD3P0DP91 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
CSB-PGBD3P0DP91 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CSB-PGBD3P0DP91 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.67
CSB-PGBD3P0DP91 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.75■■■□□ 2.67
CSB-PGBD3P0DP91 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CSB-PGBD3P0DP91 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
CSB-PGBD3P0DP91 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CSB-PGBD3P0DP91 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CSB-PGBD3P0DP91 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.72■■■□□ 2.67
CSB-PGBD3P0DP91 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC31.72■■■□□ 2.67
CSB-PGBD3P0DP91 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
CSB-PGBD3P0DP91 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CSB-PGBD3P0DP91 QDPR-206ENST00000508623 601 ntTSL 3 BASIC31.71■■■□□ 2.67
CSB-PGBD3P0DP91 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.66
CSB-PGBD3P0DP91 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
CSB-PGBD3P0DP91 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CSB-PGBD3P0DP91 AL512631.2-201ENST00000604634 923 ntBASIC31.69■■■□□ 2.66
CSB-PGBD3P0DP91 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.68■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms