Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
TPM1P09493 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.98■■□□□ 1.75
TPM1P09493 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
TPM1P09493 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TPM1P09493 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.97■■□□□ 1.75
TPM1P09493 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.97■■□□□ 1.75
TPM1P09493 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
TPM1P09493 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
TPM1P09493 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
TPM1P09493 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
TPM1P09493 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.97■■□□□ 1.75
TPM1P09493 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.96■■□□□ 1.75
TPM1P09493 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
TPM1P09493 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
TPM1P09493 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.95■■□□□ 1.74
TPM1P09493 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
TPM1P09493 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
TPM1P09493 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
TPM1P09493 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
TPM1P09493 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
TPM1P09493 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.93■■□□□ 1.74
TPM1P09493 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.93■■□□□ 1.74
TPM1P09493 SLC6A10P-202ENST00000431994 2058 ntBASIC25.92■■□□□ 1.74
TPM1P09493 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.92■■□□□ 1.74
TPM1P09493 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.92■■□□□ 1.74
TPM1P09493 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.92■■□□□ 1.74
TPM1P09493 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TPM1P09493 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
TPM1P09493 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
TPM1P09493 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TPM1P09493 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
TPM1P09493 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TPM1P09493 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TPM1P09493 LINC00543-201ENST00000567234 1845 ntBASIC25.91■■□□□ 1.74
TPM1P09493 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.9■■□□□ 1.74
TPM1P09493 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.9■■□□□ 1.74
TPM1P09493 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.9■■□□□ 1.74
TPM1P09493 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.9■■□□□ 1.74
TPM1P09493 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.9■■□□□ 1.74
TPM1P09493 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TPM1P09493 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TPM1P09493 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TPM1P09493 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
TPM1P09493 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.89■■□□□ 1.74
TPM1P09493 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25.89■■□□□ 1.73
TPM1P09493 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
TPM1P09493 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
TPM1P09493 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.89■■□□□ 1.73
TPM1P09493 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.89■■□□□ 1.73
TPM1P09493 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TPM1P09493 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TPM1P09493 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TPM1P09493 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.88■■□□□ 1.73
TPM1P09493 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.88■■□□□ 1.73
TPM1P09493 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TPM1P09493 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TPM1P09493 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.88■■□□□ 1.73
TPM1P09493 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
TPM1P09493 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TPM1P09493 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
TPM1P09493 RPS2P35-201ENST00000443417 897 ntBASIC25.87■■□□□ 1.73
TPM1P09493 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
TPM1P09493 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TPM1P09493 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TPM1P09493 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
TPM1P09493 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TPM1P09493 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
TPM1P09493 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.85■■□□□ 1.73
TPM1P09493 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TPM1P09493 AC141586.4-201ENST00000624558 1573 ntBASIC25.85■■□□□ 1.73
TPM1P09493 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms