Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SDCBPO00560 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.07■□□□□ 0.8
SDCBPO00560 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SDCBPO00560 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDCBPO00560 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.06■□□□□ 0.8
SDCBPO00560 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDCBPO00560 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDCBPO00560 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDCBPO00560 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDCBPO00560 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.05■□□□□ 0.8
SDCBPO00560 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SDCBPO00560 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDCBPO00560 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDCBPO00560 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDCBPO00560 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDCBPO00560 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.04■□□□□ 0.8
SDCBPO00560 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.04■□□□□ 0.8
SDCBPO00560 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDCBPO00560 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.04■□□□□ 0.8
SDCBPO00560 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SDCBPO00560 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDCBPO00560 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.04■□□□□ 0.8
SDCBPO00560 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDCBPO00560 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SDCBPO00560 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDCBPO00560 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SDCBPO00560 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDCBPO00560 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SDCBPO00560 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
SDCBPO00560 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDCBPO00560 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SDCBPO00560 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDCBPO00560 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDCBPO00560 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDCBPO00560 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SDCBPO00560 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.01■□□□□ 0.79
SDCBPO00560 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.01■□□□□ 0.79
SDCBPO00560 AC133561.1-201ENST00000568600 2415 ntBASIC20.01■□□□□ 0.79
SDCBPO00560 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDCBPO00560 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDCBPO00560 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SDCBPO00560 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20■□□□□ 0.79
SDCBPO00560 AC060814.1-201ENST00000554326 538 ntBASIC20■□□□□ 0.79
SDCBPO00560 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20■□□□□ 0.79
SDCBPO00560 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20■□□□□ 0.79
SDCBPO00560 AP003733.4-201ENST00000623785 1697 ntBASIC20■□□□□ 0.79
SDCBPO00560 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.99■□□□□ 0.79
SDCBPO00560 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SDCBPO00560 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.99■□□□□ 0.79
SDCBPO00560 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SDCBPO00560 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SDCBPO00560 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDCBPO00560 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SDCBPO00560 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.98■□□□□ 0.79
SDCBPO00560 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDCBPO00560 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.98■□□□□ 0.79
SDCBPO00560 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SDCBPO00560 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDCBPO00560 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDCBPO00560 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.98■□□□□ 0.79
SDCBPO00560 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDCBPO00560 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.97■□□□□ 0.79
SDCBPO00560 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.97■□□□□ 0.79
SDCBPO00560 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SDCBPO00560 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.97■□□□□ 0.79
SDCBPO00560 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDCBPO00560 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.97■□□□□ 0.79
SDCBPO00560 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms