Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 DUX4L29-201ENST00000425409 679 ntBASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-2A0A0B4J238 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-2A0A0B4J238 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRAV1-2A0A0B4J238 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
TRAV1-2A0A0B4J238 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRAV1-2A0A0B4J238 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRAV1-2A0A0B4J238 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.63■□□□□ 0.89
TRAV1-2A0A0B4J238 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.63■□□□□ 0.89
TRAV1-2A0A0B4J238 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAV1-2A0A0B4J238 AC004812.2-201ENST00000611079 2094 ntBASIC20.63■□□□□ 0.89
TRAV1-2A0A0B4J238 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-2A0A0B4J238 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-2A0A0B4J238 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV1-2A0A0B4J238 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRAV1-2A0A0B4J238 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRAV1-2A0A0B4J238 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
TRAV1-2A0A0B4J238 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRAV1-2A0A0B4J238 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.58■□□□□ 0.89
TRAV1-2A0A0B4J238 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.58■□□□□ 0.89
TRAV1-2A0A0B4J238 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
TRAV1-2A0A0B4J238 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV1-2A0A0B4J238 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.58■□□□□ 0.89
TRAV1-2A0A0B4J238 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRAV1-2A0A0B4J238 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 AL162393.1-201ENST00000437852 946 ntBASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV1-2A0A0B4J238 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-2A0A0B4J238 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L13-201ENST00000554103 1267 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L15-201ENST00000611059 1267 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L23-201ENST00000615195 1269 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 MIR6089-201ENST00000616698 64 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L24-201ENST00000617576 1269 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L22-201ENST00000618238 1269 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L20-201ENST00000619712 1269 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L21-201ENST00000622058 1269 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L10-201ENST00000622460 1267 ntBASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 DUX4L25-201ENST00000624915 1269 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms