Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 ME2P1-201ENST00000426028 1970 ntBASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 HLA-V-204ENST00000476601 1289 ntBASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 MIR943-201ENST00000401286 94 ntBASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 BASP1P1-201ENST00000430708 665 ntBASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CHMP4AQ9BY43 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4AQ9BY43 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4AQ9BY43 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4AQ9BY43 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4AQ9BY43 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4AQ9BY43 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 AL139010.1-201ENST00000454878 894 ntBASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 AC105021.1-202ENST00000570572 669 ntBASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CHMP4AQ9BY43 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 AC011467.4-201ENST00000594891 528 ntBASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 RN7SL828P-201ENST00000607615 303 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms